Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015934654.1_cds_XP_016480660.1_72078
CDS Infomation

[gene=LOC107801785] [db_xref=GeneID:107801785] [protein=DNA ligase 1-like isoform X2] [protein_id=XP_016480660.1] [location=join(1472..1954,3010..3072,4041..4802,4912..5043,5180..5293,5844..5903,7101..7139)] [gbkey=CDS]
Sequence

ATGGGAAACCGGCGGTTAGCGGTGGTAGCGATAAGCGACGATGAGGACGACGACGACAAA
TTGCCGCTATCGCGTGTAACACGCGCTTCCAACAACGGCGAAGTTAAAGCGAATAGTCAA
AGGAAGCGTAAGAAAGTAAAGCTCGACGAAGAAGAAGAAGAAAAGCCACAGGAGGAAGAA
GAGGAAGCGAATAATGATGATGAAAGTAGAGATAAGAGGAAGAAGAAGAGGAAAATGTGG
GAAAACGAGGAGGAGGAGGAGGAGGAGAGAGGCAGGGGGAAGAGGAATAAGAAGAAGAAA
TTTGACGAAGAACCGGAGCTTGAATCGGAACCTGAACCGGTTGAAGAGGAGGAGGAGGAG
GTGGAAGAAGAACAGCTGGAAGATGCTAAGCCTATTGGTGATGTAATTAGGGTTACTGGA
AAAGGTAAAGGGAGGAGAAACCATTATGAGTCCTTCGAGTACGATGGAAATCGCTATGAA
CTTGAGGATCCCGTGCTCTTGGTTCCAGAAGCAAAAAATCAGAAGCCCTATGTGGCAATT
ATCAAGGATATTACTCAGACCAAGGATGTGAACATGATGGTCACAGGACAGTGGTTTTAC
AGACCCGAGGAAGCTCAAAGAAGAAATGGTGGAAATTGGCAATCACGAGACACGAGGGAA
TTGTTCTATAGTTTTCATAGGGACGAAGTTCCTGCAGAGTCAGTCATGCACAAGTGTGTG
GTGCACTTCATACCGTTAAACAAGCAGATTCCAGGCCGGAAAGAGCATCCTGGTTTTATT
GTTCAAAAGGTATATGACACTGAGCAGATGAAGCTTTTCAAGTTAACAGACAAGGATTAT
GAAGATACCAAACAGCAGGAAATTGATCTGCTTGTTCATAAGACTATTGCACGAGTTGGG
CATCTTCCTGACATTGAAACTGAGGATAATTCTGCAGCTCCTGTTAGTCAGGAAGACCAA
TTGAAGAGTAAACGACTTTTGAGGAAGAAGAGCATGACGCCTTTGGATGTCACCAGAGAA
GATGAAGCACCAACTAGATTTGGTCAATCTAAAGCAGAAACTCCAGGCAGTTGTCCCAAT
AATGCATCAGAATACTTCATCATCCTTTCAAACTTCAATGTCCTAACTGGTGAAACACAG
CGTGACAAATGGCTGGATAAACTGCTGCAGTCAATTCAGTTTTTGTGCAATCCTGTGGAT
AATGTACAAAATGATGGTAAAGAAAAAGGGGGCTCAGATGTTACTGATCTTACTTGTAAT
TCCGGTTCTGCAAAGCATGTGAATGAGTCTCCAGACAATGGTGCCAATGATGATAAGTTT
CGATGGCCAGACAGTGCTGTCCCTGCTGTAGTCGCTCTGGAGAAAGCTGCACACGAGACT
CTCTCATGTGATTTTCAGAAGTACAATCAGAAGATGAGGCAGTTAACATTCAATCTTAAG
AACAATTCTTCCTTATCAAAAACATTCCAGAACAGCTCACTCTTAGCACGCCGTCTTTTG
AATGGGGAGTTGGATCCCTCACAGATACTGAACATGTCCCCCAATGAGCTAAAGGAAGGT
CTAACAGCAGAAGAGATAGCAAGCAGGGAGCCCGAAGAGCCGGAGCCCATACAGATGACT
GATGCTTCTTACAGAAAACTTTACAAAGGTTGA

Peptide Sequence

PEP ID

XP_016480660.1
PEP Infomation

PREDICTED: DNA ligase 1-like isoform X2 [Nicotiana tabacum]
Sequence

MGNRRLAVVAISDDEDDDDKLPLSRVTRASNNGEVKANSQRKRKKVKLDEEEEEKPQEEE
EEANNDDESRDKRKKKRKMWENEEEEEEERGRGKRNKKKKFDEEPELESEPEPVEEEEEE
VEEEQLEDAKPIGDVIRVTGKGKGRRNHYESFEYDGNRYELEDPVLLVPEAKNQKPYVAI
IKDITQTKDVNMMVTGQWFYRPEEAQRRNGGNWQSRDTRELFYSFHRDEVPAESVMHKCV
VHFIPLNKQIPGRKEHPGFIVQKVYDTEQMKLFKLTDKDYEDTKQQEIDLLVHKTIARVG
HLPDIETEDNSAAPVSQEDQLKSKRLLRKKSMTPLDVTREDEAPTRFGQSKAETPGSCPN
NASEYFIILSNFNVLTGETQRDKWLDKLLQSIQFLCNPVDNVQNDGKEKGGSDVTDLTCN
SGSAKHVNESPDNGANDDKFRWPDSAVPAVVALEKAAHETLSCDFQKYNQKMRQLTFNLK
NNSSLSKTFQNSSLLARRLLNGELDPSQILNMSPNELKEGLTAEEIASREPEEPEPIQMT
DASYRKLYKG

Transcript Sequence

Gene sequence data has not been registered.